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Jesus M. Cortes

Neuroscience, Brain connectivity and Machine Learning
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Jesus M. Cortes

Neuroscience, Brain connectivity and Machine Learning
  • Search
  • Home
  • Biosketch
  • Latest News
  • Talks
  • Publications
    • JCR Articles
    • non JCRs
    • Abstracts
  • Teaching

2018, Data Science for Modern Pathology. SEAP-IAP Destapa. Madrid, Spain

Talks

Data Science for Modern Pathology

Published June 6, 2018

2018, La neuroimagen computacional. Una recreación funcional de la neuroanatomia. Ciclo de conferencias FME 50 Urte. Leioa, Spain

Talks

La neuroimagen computacional. Una recreacion funcional de la neuroanatomia

Published February 26, 2018

In collaboration with Luca Gerardo – Giorda (BCAM, Bilbao) and Sebastiano Stramaglia (Univ of Bari), we are organizing the 2018 Quantitative Biomedicine Workshop. Further information (program and registration info) can be found at http://www.bcamath.org/en/workshops/qbio2018 The poster conference [pdf] The book of abstracts [pdf]

Latest News

4th Quantitative Biomedicine Workshop (2018)

Published February 26, 2018

T. Lissek., et. al. , M.T. Hasan. Building Bridges through Science. Neuron 96:730-735, 2017 [pdf] Science is ideally suited to connect people from different cultures and thereby foster mutual understanding. To promote international life science collaboration, we have launched ‘‘The Science Bridge’’ initiative. Our current project focuses on partnership between Western and Middle Eastern neuroscience communities.

JCR Articles Publications

Building Bridges through Science

Published February 2, 2018

I am Ikerbasque Research Professor (hosted by the new created BioCruces) Further information: 1. Visit its website 2. Watch this introductory video 3. Read this dossier 4. Watch the video on the 2014 scientific output 5. Read the research strategy for the years 2018-2021 Annual Reports: 1. 2007-2011 scientific output 2. 2012 scientific output 3. 2013 scientific output 4. 2014 scientific output 5. 2015 scientific output 6. 2017 scientific output […]

Latest News

What is Ikerbasque?

Published January 26, 2018

2017, From multimodal images to connectivity of brain networks in both healthy and pathological conditions. COSTNET17 Conference. Mallorca, Spain

Talks

From multimodal images to connectivity of brain networks in both healthy and pathological …

Published November 7, 2017

2017, Brain disconnectivity after traumatic brain injury. 3rd ANNUAL NEUROSCIENCE CONFERENCE. Aga Khan University. Karachi, Pakistan

Talks

Brain disconnectivity after traumatic brain injury

Published November 7, 2017

A. Erramuzpe, JM Cortes and JI Lopez. Multisite tumor sampling enhances the detection of intratumor heterogeneity at all different temporal stages of tumor evolution. Virchows Arch 472:187-194, 2018 [pdf] Abstract Intratumor heterogeneity (ITH) is an inherent process of tumor development that has received much attention in previous years, as it has become a major obstacle for the success of targeted therapies. ITH is also temporally unpredictable across tumor evolution, which […]

JCR Articles Publications

Multisite tumor sampling enhances the detection of intratumor heterogeneity at all different temporal …

Published November 7, 2017

Javier Rasero*, Carmen Alonso Montes*, Ibai Diez*, Laiene Olabarrieta-Landa, Lakhdar Remaki, Iñaki Escudero, Beatriz Mateos Goñi, Paolo Bonifazi, Manuel Fernandez Martinez, Juan Carlos Arango-Lasprilla, Sebastiano Stramaglia** and Jesus Cortes** (*Equal first-author contribution) (**Equal last-author contribution). Group-Level Progressive Alterations in Brain Connectivity Patterns Revealed by Diffusion-Tensor Brain Networks across Severity Stages in Alzheimer’s Disease. Frontiers in Aging Neuroscience 9:215, 2017 [pdf] Alzheimer’s disease (AD) is a chronically progressive neurodegenerative disease highly […]

JCR Articles Publications

Group-Level Progressive Alterations in Brain Connectivity Patterns Revealed by Diffusion-Tensor Brain Networks across …

Published July 12, 2017

J Rasero, M Pellicoro, L Angellini, JM Cortes, D Marinazzo, S Stramaglia. Consensus clustering approach to group brain connectivity matrices. Network Neuroscience 1: 242-253, 2017 [pdf] A novel approach rooted on the notion of consensus clustering, a strategy developed for community detection in complex networks, is proposed to cope with the heterogeneity that characterizes connectivity matrices in health and disease. The method can be summarized as follows: (i) define, for […]

JCR Articles Publications

Consensus clustering approach to group brain connectivity matrices

Published July 12, 2017

JM Cortes, Giovanni de Petris, JI Lopez. Detection of intra-tumor heterogeneity in modern pathology: A multi-site tumor sampling (MSTS) perspective. Frontiers in Medicine 4:25 , 2017 [pdf] Current sampling protocols of neoplasms along the digestive tract and in the urinary bladder have to be updated, as they do not respond to the necessities of modern personalized medicine. We show here that an adapted version of multisite tumor sampling (MSTS) is […]

JCR Articles Publications

Detection of intra-tumor heterogeneity in modern pathology: A multi-site tumor sampling (MSTS) perspective

Published July 12, 2017

JM Kroos, I Marinelli, I Diez, JM Cortes, S Stramaglia, and L Gerardo-Giorda. Patient-specific computational modeling of Cortical Spreading Depression via Diffusion Tensor Imaging. International Journal for Numerical Methods in Biomedical Engineering, 2017 [pdf] Cortical spreading depression, a depolarization wave originating in the visual cortex and traveling towards the frontal lobe, is commonly accepted as a correlate of migraine visual aura. As of today, little is known about the mechanisms […]

JCR Articles Publications

Patient-specific computational modeling of Cortical Spreading Depression via Diffusion Tensor Imaging

Published July 12, 2017

2017. From multimodal images to connectivity of brain networks in both healthy and pathological conditions. Friedrich-Alexander-Universitt, Germany

Talks

From multimodal images to connectivity of brain networks in both healthy and pathological …

Published July 12, 2017

2017. Brain disconnectivity and reorganization after TBI. Basque Neurology Society. Getxo, Spain

Talks

Brain disconnectivity and reorganization after TBI

Published July 12, 2017

2017. Evidence and future in neuroimaging and brain connectivitty in Sanfilippo Syndrome. Mead Johnson Bilbao, Spain

Talks

Evidence and future in neuroimaging and brain connectivitty in Sanfilippo Syndrome

Published July 12, 2017

S. Stramaglia, M. Pellicoro, L. Angelini, E. Amico, H. Aerts, J.M. Cortes, S. Laureys, and D. Marinazzo. Ising Model with conserved magnetization on the Human Connectome: implications on the relation structure-function in wakefulness and anesthesia. Chaos 27: 047407, 2017 [pdf] Dynamical models implemented on the large scale architecture of the human brain may shed light on how function arises from the underlying structure.This is the case notably for simple abstract […]

JCR Articles Publications

Ising Model with conserved magnetization on the Human Connectome: implications on the relation …

Published February 1, 2017

Jose Ignacio Lopez and Jesus M Cortes. Multi-Site Tumor Sampling (MSTS): A new tumor selection method to enhance intratumor heterogeneity detection. Human Pathology 64:1-6, 2017 [pdf] Intratumor heterogeneity (ITH) is increasingly being recognized as a highly complex process with high clinical impact that deserves special attention from practicing pathologists. The goodness of the ITH detection depends on the correctness of the pathologist’s sampling. The goal of this review is twofold. […]

JCR Articles Publications

Multi-Site Tumor Sampling (MSTS): A new tumor selection method to enhance intratumor …

Published February 1, 2017

Ildefonso de la Fuente, Iker Malaina, Alberto Perez-Samartin, Maria D. Boyano, Gorka Perez- Yarza, Carlos Bringas, Alvaro Villarroel, Maria Fedetz, Jesus M Cortes and Luis Martinez. Dynamic properties of calcium-activated chloride currents in Xenopus laevis oocytes. Scientific Reports 7:41791, 2017 [pdf] Chloride is the most abundant permeable anion in the cell, and numerous studies in the last two decades highlight the great importance and broad physiological role of chloride currents […]

JCR Articles Publications

Dynamic properties of calcium-activated chloride currents in Xenopus laevis oocytes

Published February 1, 2017

Jose Ignacio Lopez, Asier Erramuzpe, Rosa Guarch, Jesus M Cortes, Roberto Llarena and Javier C Angulo. CD34 immunostaining enhances a distinct pattern of intratumor angiogenesis with prognostic implications in clear cell renal cell carcinoma. APMIS 125: 128-133, 2017 [pdf] Clear cell renal cell carcinoma is an aggressive neoplasm related to VHL gene inactivation. The molecular events derived from this initial alteration lead to a permanent intracellular pseudo-hypoxic status that stimulates […]

JCR Articles Publications

CD34 immunostaining enhances a distinct pattern of intratumor angiogenesis with prognostic implications in …

Published February 1, 2017

Being part of the Brainhack Global series, and organized by Asier Erramuzpe, we are local hosting the Brainhack- Global event in Bilbao, March 2-4, 2017 Further information at https://www.eventbrite.es/e/entradas-brainhack-bilbao-31508133676

Latest News

Brainhack Bilbao

Published February 1, 2017

In collaboration with Luca Gerardo – Giorda (BCAM, Bilbao) and Sebastiano Stramaglia (Univ of Bari), we are organizing the 2017 Quantitative Biomedicine Workshop. Further information (program and registration info) can be found at http://www.bcamath.org/en/workshops/qbio2017 The poster conference [pdf] The book of abstracts [pdf]  

Latest News

3th Quantitative Biomedicine Workshop (2017)

Published February 1, 2017

A privilege to work with such wonderful people, from left to right, Asier Erramuzpe, Paolo Bonifazi, Jesus Cortes, Beatriz Mateos, Ibai Diez, Iñaki Escudero and Javier Rasero.

Latest News

New Lab Photo

Published December 1, 2016

2016, Brain connectivity methods in humans and their application to different pathologies. Andes University. Bogota, Colombia

Talks

Brain connectivity methods in humans and their application to different pathologies

Published November 29, 2016

2016, Connectivity and Disconnectivity after Traumatic Brain Injury. Invited talk. Sexto Congreso Internacional de Neuropsicologia Intrahospitalaria. Bogota, Colombia

Talks

Connectivity and Disconnectivity after Traumatic Brain Injury

Published November 29, 2016

2016, Brain connectivity methods in humans and their application to different pathologies. University of Antioquia. Medellin, Colombia

Talks

Brain connectivity methods in humans and their application to different pathologies

Published November 29, 2016

My collaboration with Dr. JI Lopez on a new method for tumor sampling called Multi-Site Tumor Sampling went to the so prestigious journal The Pathologist Here, you can download the pdf Here, you can visit the website

Latest News

Read our interview by The Pathologist

Published November 29, 2016

From the interaction between different people with common interests and ambitions, we have created and are participating in the neurokafe. More information at https://neurokafe.github.io/

Latest News

We are happy to participate in the neurokafe

Published October 5, 2016

2016, The Brain Hierarchical Atlas. Meeting Biophys e Pieces – INFN. Bari, Italy

Talks

The Brain Hierarchical Atlas

Published October 5, 2016

Ibai Diez, David Drijkoningen, Sebastiano Stragmalia, Paolo Bonifazi, Daniele Marinazzo, Jolien Gooijers, Stephan P. Swinnen, Jesus M. Cortes. Enhanced pre-frontal functional-structural networks to support postural control deficits after traumatic brain injury in a pediatric population. Network Neuroscience 1: 116-142, 2017 [pdf] Preprint at [pdf] Traumatic brain injury (TBI) affects the structural connectivity, triggering the re-organization of structural-functional circuits in a manner that remains poorly understood. We focus here on brain […]

JCR Articles Publications

Enhanced pre-frontal functional-structural networks to support postural control deficits after traumatic brain injury …

Published August 28, 2016

J Mingo, A Erramuzpe, S Luna, I Diez, JM Cortes and R Pulido. One-Tube-Only Standardized Site-Directed Mutagenesis: An Alternative Approach to Generate Amino Acid Substitution Collections. PLoS One 11: e0160972, 2016 [pdf] Site-directed mutagenesis (SDM) is a powerful tool to create defined collections of protein variants for experimental and clinical purposes, but effectiveness is compromised when a large number of mutations is required. We present here a one-tube-only standardized SDM […]

JCR Articles Publications

One-Tube-Only Standardized Site-Directed Mutagenesis: An Alternative Approach to Generate Amino Acid Substitution Collections

Published August 24, 2016

[spanish]

Jesus M. Cortes, Physicist, Data Scientist:

  • More than 20 years experience - In research, working in data science, including modeling, analyses, and image processing, see my ORCID profile at https://orcid.org/0000-0002-9059-8194
  • High interdisciplinary experience - Combining physics, neuroscience, neuroimaging, data science, engineering, and medicine.
  • Getting funding - In competitive calls and working with the industry, achieving funding for more than 9,14 Millions Euros.
  • Science communication - Giving more than 119 talks at the international level, and publishing 129 articles indexed in Journal Citation Reports, 100 of them in the first quartile.
  • Training of qualified professionals - Supervising more than 40 students, including Bachelor, Master, and Thesis.
  • Research projects evaluation - Regularly for different funding agencies such as Spanish National Science and Health Ministry, and also at international programs, such as the Marie Sklodowska-Curie Actions, the Israel Science Foundation, the Research Foundation Flanders (FWO), the EPSRC in the UK, and the BBSRC in the UK.

Contact - If you are interested in knowing details or possibilities of collaboration:
Jesus M. Cortes, Ph.D.:
jesus.m.cortes@gmail.com
Computational Neuroimaging Lab
BioBizkaia Health Research Institute
Hospital Universitario Cruces
Plaza de Cruces, s/n E-48903. Barakaldo, Spain
Tel +34 94 600 6000 (ext. 5199)


 

Jesus M. Cortes, Físico, Científico de Datos:

  • Más de 20 años de experiencia - En investigación, trabajando con datos, en modelado, análisis e imágenes. Consulte mi perfil profesional ORCID en https://orcid.org/0000-0002-9059-8194
  • Altamente interdisciplinar - Combinando física, neurociencias, neuroimagen, ciencia de datos, ingeniería y medicina.
  • Consiguiendo financiación - En convocatorias competitivas y trabajando con la industria, habiendo conseguido más de 9,14 Millones de Euros.
  • Difusión internacional - Impartiendo más de 119 charlas a nivel internacional y publicando más 129 artículos indexados en el Journal Citation Reports, 100 de ellos en primer cuartil.
  • Formación de personal cualificado - Supervisando a más de 40 estudiantes, incluyendo Licenciatura, Maestría y Tesis.
  • Evaluación de proyectos - Lo hago de forma habitual en el Plan Nacional de Ciencia y Salud Español, y en programas internacionales, incluidas las acciones Marie Sklodowska-Curie, la Israel Science Foundation, la Research Foundation Flanders (FWO), EPSRC en Reino Unido y BBSRC en Reino Unido.
  • Contacta - Si estás interesado en conocer detalles o posibilidades de colaboración:

Jesus M. Cortes, Ph.D.:
jesus.m.cortes@gmail.com
Computational Neuroimaging Lab
BioBizkaia Health Research Institute
Hospital Universitario Cruces
Plaza de Cruces, s/n E-48903. Barakaldo, Spain
Tel +34 94 600 6000 (ext. 5199)

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