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Jesus Cortes

Bran Connectivity & Machine Learning
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Jesus Cortes

Bran Connectivity & Machine Learning
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  • Home
  • Biosketch
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  • Publications
    • JCR Articles
    • non JCRs
    • Abstracts
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Rocío Del Pino, Marian Acera, Ane Murueta-Goyena, Olaia Lucas-Jimenez, Natalia Ojeda, Naroa Ibarretxe-Bilbao, Javier Pena, Paula Reyero, Jesus M Cortes, Beatriz Tijero, Marta Galdos, Juan Carlos Gomez-Esteban, Inigo Gabilondo. Visual dysfunction is associated with cognitive impairment in Parkinson’s disease. Parkinsonism and Related Disorders 92: 22–25, 2021. article: [pdf] Abstract Introduction: Visual dysfunction and cognitive impairment are common in Parkinson’s disease (PD) but the precise contribution of lower-level visual impairment to […]

JCR Articles Publications

Visual dysfunction is associated with cognitive impairment in Parkinson’s disease

Published May 9, 2022

Garazi Labayru, Borja Camino, Antonio Jimenez‑Marin, JoanaGarmendia , JorgeVillanua , Miren Zulaica, Jesus M. Cortes, Adolfo López de Munain & Andone Sistiaga. Scientific Reports 12:3988, 2022  article: [pdf] Abstract Myotonic Dystrophy Type 1 (DM1) is a multisystemic disease that afects gray and white matter (WM) tissues. WM changes in DM1 include increased hyperintensities and altered tract integrity distributed in a widespread manner. However, the precise temporal and spatial progression of […]

JCR Articles Publications

White matter integrity changes and neurocognitive functioning in adult‑late onset DM1: a follow‑up …

Published March 8, 2022

2022, Potpourri of practical cases using machine learning in biomedical research. AI4MED Talk Series. Artificial Inteligence (AI): a friend not an enemy to clinicians. Colegio de Medicos de Bizkaia, Bilbao, Spain

Talks

Potpourri of practical cases using machine learning in biomedical research

Published February 27, 2022

Ha sido un placer charlar con unos profesionales del periodismo y de la comunicación como son Juan Ramón Lucas y Alberto Aparicio. Puedes escuchar la entrevista en este audio. El link a la entrevista lo puedes encontrar aquí.  

Latest News

Intervención en Onda Cero, Programa La Brújula

Published February 14, 2022

Antonio Jimenez-Marin, Nele De Bruyn, Jolien Gooijers, Alberto Llera, Sarah Meyer, Kaat Alaerts, Geert Verheyden, Stephan P. Swinnen, and Jesus M. Cortes. Multimodal lesion network mapping for prediction of sensorimotor behavior in stroke patients. OHBM 2022 – Organization for Human Brain Mapping [pdf] Introduction: Mapping the behavioral impact of brain lesions is of crucial importance for clinical practice. Regardless of the cause of the lesion, its size or the precise […]

Abstracts Publications

Multimodal lesion network mapping for prediction of sensorimotor behavior in stroke patients

Published December 20, 2021

Alberto Cabrera-Zubizarreta, Antonio Jimenez-Marin, Daniela Ramos-Usuga, Itziar Benito-Sanchez, Endika Martinez-Gutierrez, Victoria Boado, Fermin Labayen, Juan Carlos Arango-Lasprilla, and Jesus M. Cortes. Long-COVID: Aberrant connectivity of salience network in critically-ill patients. OHBM 2022 – Organization for Human Brain Mapping [pdf] Introduction: Long-COVID, a.k.a. post COVID syndrome, is a poorly defined systemic con-dition that encompasses fatigue, headaches and muscle aches, memory loss, sleep disorders, concentration problems and attention deficit, among other symptoms. […]

Abstracts Publications

Long-COVID: Aberrant connectivity of salience network in critically-ill patients

Published December 20, 2021

Endika Martínez Gutiérrez, Antonio Jiménez Marín, Sebastiano Stramaglia, and Jesus M. Cortes. Large scale brain organization of anti-correlated networks and their variations in the aging brain. OHBM 2022 – Organization for Human Brain Mapping [pdf] Introduction: Anatomically connected networks introduce statistical dependencies in the dynamics of the connected regions, inducing functional connectivity (FC). However, FC might also occur between regions with no direct anatomical connections, due to multiple effects such […]

Abstracts Publications

Large scale brain organization of anti-correlated networks and their variations in the aging …

Published December 20, 2021

Borja Camino-Pontes, Marilyn Gatica, Antonio Jimenez-Marin, Patricio Orio, Rodrigo Cofre, Jesus M Cortes. Modular structure of high-order interactions in the human brain. OHBM 2022 – Organization for Human Brain Mapping [pdf] Introduction: A network is highly modular when different communities of nodes have high intra-connectivity within them and low inter-connectivity between them. Different methods and strategies have been used to maximize modularity in brain networks, see for instance [1] and […]

Abstracts Publications

Modular structure of high-order interactions in the human brain

Published December 20, 2021

Jesús M. Cortes, Borja Camino-Pontes, Antonio Jimenez-Marin, Iñaki Escudero, Beatriz Mateos, Alberto Cabrera-Zubizarreta, Miguel Ángel Muñoz, Sebastiano Stramaglia, Marta Subiran, Jorge Garcia-Condado, Paolo Bonifazi. Brain Hierarchical Atlas: Multi-Scale vs. Optimal Strategies in the Healthy and Pathological Brain. OHBM 2022 – Organization for Human Brain Mapping [pdf] Introduction: Elucidating the intricate relationship between brain structure and function is a classical –yet not fully understood– challenge for modern neuroscience. We developed the […]

Abstracts Publications

Brain Hierarchical Atlas: Multi-Scale vs. Optimal Strategies in the Healthy and Pathological Brain

Published December 20, 2021

Marilyn Gatica Briceño, Fernando E. Rosas, Pedro A.M. Mediano, Ibai Diez, Stephan P. Swinnen, Patricio Orio, Rodrigo Cofre, Jesus M. Cortes. HIGH-ORDER INTERACTIONS IN AGING EXPLAINED THROUGH CHANGES IN THE CONNECTOME IN A WHOLE-BRAIN MODEL. OHBM 2022 – Organization for Human Brain Mapping [pdf] Introduction: Previous studies of functional connectivity along the lifespan during resting state have shown that regions within the default mode network (DMN) become less functionally connected […]

Abstracts Publications

HIGH-ORDER INTERACTIONS IN AGING EXPLAINED THROUGH CHANGES IN THE CONNECTOME IN A WHOLE-BRAIN …

Published December 20, 2021

Ha sido un placer charlar con una profesional del periodismo y de la comunicación como es Estíbaliz Ruiz de Azua. Puedes escuchar la entrevista en este audio. El link a la entrevista lo puedes encontrar aquí

Latest News

Entrevista en EITB, Programa Distrito-Euskadi

Published December 20, 2021

Maider Nuñez-Ibero, Borja Camino-Pontes, Ibai Diez, Asier Erramuzpe, Endika Martinez-Gutierrez, Sebastiano Stramaglia, Javier O. Alvarez-Cienfuegos, and Jesus M. Cortes. A Controlled Thermoalgesic Stimulation Device for Exploring Novel Pain Perception Biomarkers. IEEE JOURNAL OF BIOMEDICAL AND HEALTH INFORMATICS 25: 2948-2957, 2021. biorxiv: [pdf] article: [pdf] Abstract Objective: To develop a new device for identifying physiological markers of pain perception by reading the brain’s electrical activity and hemodynamic interactions while applying thermoalgesic […]

JCR Articles Publications

A Controlled Thermoalgesic Stimulation Device for Exploring Novel Pain Perception Biomarkers

Published September 1, 2021

2021, Que es la conectividad cerebral y como utilizarla en Investigacion clinica. Programa especial del 50 aniversario de la Universidad del Norte. Psicologia de la Salud: desafios contemporaneos y nuevas perspectivas. Univesidad del Norte, Barranquilla, Colombia

Talks

Que es la conectividad cerebral y como utilizarla en Investigacion clinica

Published June 8, 2021

2021, Redes del cerebro, edad del conectoma, y como utilizarla para el estudio de patologias. Universidad del Valparaiso, Chile

Talks

Redes del cerebro, edad del conectoma, y como utilizarla para el …

Published June 8, 2021

Antonio Jimenez-Marin, Ibai Diez, Maria C. Caballero, Isidro Ferrer, Garazi Labayru, Pol Andres-Benito, Andone Sistiaga, Jorge Sepulcre, Adolfo Lopez de Munain, and Jesus M. Cortes. Transcriptional signatures of synaptic vesicle genes define myotonic dystrophy type I neurodegeneration. Neuropathology and Applied Neurobiology . In press, 2021. biorxiv: [pdf] article: [pdf] Abstract Aim: To delineate the neurogenetic profiles of brain degeneration patterns in myotonic dystrophy type I (DM1). Methods: In two cohorts […]

JCR Articles Publications

Transcriptional signatures of synaptic vesicle genes define myotonic dystrophy type I neurodegeneration

Published June 8, 2021

Changchun He, Heng Chen, Xiaonan Guo, Ruishi Wang, Lingyin Kong, Xinyue Huang, Huafu Chen, Jinming Xiao, Xiaolong Shan, Rui Feng, Xujun Duan. Individual-based morphological brain network organization and its association with autistic symptoms in young children with autism spectrum disorder. Human Brain Mapping. In press, 2021 [pdf] Abstract Individual-based morphological brain networks built from T1-weighted magnetic resonance imaging (MRI) reflect synchronous maturation intensities between anatomical regions at the individual level. […]

JCR Articles Publications

Individual-based morphological brain network organization and its association with autistic symptoms in young …

Published June 8, 2021

Leire Torices, Javier de las Heras, Juan Carlos Arango-Lasprilla, Jesús M. Cortes, Caroline E. Nunes-Xavier , Rafael Pulido. MMADHC premature termination codons in the pathogenesis of cobalamin D disorder: Potential of translational readthrough reconstitution. Molecular Genetics and Metabolism Reports. In press, 2021 [pdf] Abstract Mutations in the MMADHC gene cause cobalamin D disorder (cblD), an autosomal recessive inborn disease with defects in intracellular cobalamin (cbl, vitamin B12) metabolism. CblD patients […]

JCR Articles Publications

MMADHC premature termination codons in the pathogenesis of cobalamin D disorder: Potential of …

Published June 8, 2021

Sandra Luna, Leire Torices, Janire Mingo, Laura Amo, Isabel Rodríguez‐Escudero, Pablo Ruiz‐Ibarlucea, Asier Erramuzpe, Jesús M. Cortés, María I. Tejada, María Molina, Caroline E. Nunes‐Xavier, José I. López, Víctor J. Cid, and Rafael Pulido. A global analysis of the reconstitution of PTEN function by translational readthrough of PTEN pathogenic premature termination codons. Human Mutation. In press, 2021 [pdf] Abstract The PTEN tumor suppressor gene is mutated with high incidence in […]

JCR Articles Publications

A global analysis of the reconstitution of PTEN function by translational readthrough of …

Published June 8, 2021

Marilyn Gatica, Rodrigo Cofré, Pedro A.M. Mediano, Fernando E. Rosas, Patricio Orio, Ibai Diez, Stephan P. Swinnen, and Jesus M. Cortes. High-order interdependencies in the aging brain. Brain connectivity . In press, 2021. biorxiv: [pdf] article: [pdf] Abstract Background: Brain interdependencies can be studied from either a structural/anatomical perspective (“structural connectivity”-SC) or by considering statistical interdependencies (“functional connectivity”-FC). Interestingly, while SC is by definition pairwise (white-matter fibers project from one […]

JCR Articles Publications

High-order interdependencies in the aging brain

Published June 8, 2021

JJ Torres, MA Muñoz, Jesus M Cortes, J Mejias. Special Issue on Emergent Effects in Stochastic Neural Networks with Application to Learning and Information Processing. Neurocomputing . In press, 2021. [pdf] Abstract This special issue includes a series of 12 articles, which represent a selection of extended contributions presented at the 15th Granada Seminar on Computational and Statistical Physics held in Granada from September 17 to 20, 2019, and organized […]

JCR Articles Publications

Emergent Effects in Stochastic Neural Networks

Published June 8, 2021

A Safari, P Moretti, I Diez, JM Cortes, MA Muñoz. Persistence of hierarchical network organization and emergent topologies in models of functional connectivity. Neurocomputing . In press, 2021. arxiv: [pdf] article: [pdf] Abstract Functional networks provide a topological description of activity patterns in the brain, as they stem from the propagation of neural activity on the anatomical or structural network of synaptic connections. This last is well known to be […]

JCR Articles Publications

Persistence of hierarchical network organization and emergent topologies in models of functional connectivity

Published February 8, 2021

I Fernandez-Iriondo, A Jimenez-Marin, I Diez, P Bonifazi, SP Swinnen, MA Munoz, JM Cortes. Low variability of dynamical functional connectivity in cerebellar networks. Neurocomputing . In press, 2021 biorxiv: [pdf] article: [pdf] Abstract Brain networks can be defined and explored using different types of connectivity. Here, we studied P=48 healthy participants with neuroimaging state-of-the-art techniques and analyzed the relationship between the actual structural connectivity (SC) networks (between 2514 regions of […]

JCR Articles Publications

Low variability of dynamical functional connectivity in cerebellar networks

Published January 5, 2021

Ane Murueta‐Goyena, Rocío Del Pino, Marta Galdós, Begoña Arana, Marian Acera, Mar Carmona‐Abellán, Tamara Fernández‐Valle, Beatriz Tijero, Olaia Lucas‐Jiménez, Natalia Ojeda, Naroa Ibarretxe‐Bilbao, Javier Peña, Jesus Cortes, Unai Ayala, Maitane Barrenechea, Juan Carlos Gómez‐Esteban, and Iñigo Gabilondo. Retinal Thickness Predicts the Risk of Cognitive Decline in Parkinson Disease. Annals of neurology 89: 165-176, 2021 [pdf] Abstract Objective: This study was undertaken to analyze longitudinal changes of retinal thickness and their […]

JCR Articles Publications

Retinal Thickness Predicts the Risk of Cognitive Decline in Parkinson Disease

Published January 5, 2021

Garazi Labayru, Antonio Jimenez-Marin, Esther Fernandez, Jorge Villanua, Miren Zulaica, Jesus M. Cortes, Ibai Diıez, Jorge Sepulcre, Adolfo Lopez de Munain, Andone Sistiaga. Neurodegeneration trajectory in pediatric and adult/lateDM1: A follow-up MRI study across a decade. Annals of Clinical and Translational Neurology 7:1802-1815, 2020 [pdf] Abstract Objective: To characterize the progression of brain structural abnormalities in adults with pediatric and adult/late onset DM1, as well as to examine the potential […]

JCR Articles Publications

Neurodegeneration trajectory in pediatric and adult/lateDM1: A follow-up MRI study across a decade

Published October 2, 2020

2020, Avances en conectividad de cerebral en enfermedades neurodegenerativas y en daño cerebral adquirido. XLVII SEMANA MÉDICA-NEUROLÓGICA. 28-30 sept, Bilbao, Spain

Talks

Avances en conectividad de cerebral en enfermedades neurodegenerativas y en daño cerebral …

Published October 2, 2020

Informativo ITEMAS habla de nuestro proyecto financiado por primera vez a una institución española por la iniciativa Brain. This project, headed by Prof. Hasan in Achucarro, and where also participates Prof. Ramos in CIC-Biomagune and muyself, aims to achieve whole-brain imaging at cellular resolution You can watch the video at (in Spanish).

Latest News

Informativo ITEMAS habla de nuestro proyecto

Published July 11, 2020

Javier De Las Heras, Ibai Diez, Antonio Jimenez-Marin, Alberto Cabrera, Daniela Ramos-Usuga, Marta Venecia Diaz-Fernandez, Leire Torices,Caroline E. Nunes-Xavier, Rafael Pulido, Juan Carlos Arango-Lasprilla, and Jesus M. Cortes. Brain Circuit Alterations and Cognitive Disability in Late-Onset Cobalamin D Disorder. J Clinical Medicine 9: 990, 2020 [pdf] Abstract Neuroimaging studies describing brain circuits’ alterations in cobalamin (vitamin B12)-deficient patients are limited and have not been carried out in patients with inborn […]

JCR Articles Publications

Brain Circuit Alterations and Cognitive Disability in Late-Onset Cobalamin D Disorder

Published June 12, 2020

Changchun He, Huafu Chen, Lucina Q Uddin, Asier Erramuzpe, Paolo Bonifazi, Xiaonan Guo, Jinming Xiao, Heng Chen, Xinyue Huang, Lei Li, Wei Sheng, Wei Liao, Jesus M Cortes, and Xujun Duan. Structure-Function Connectomics Reveals Aberrant Developmental Trajectory Occurring at Preadolescence in the Autistic Brain. Cerebral Cortex 30: 5028–5037, 2020 [pdf] Abstract Accumulating neuroimaging evidence shows that age estimation obtained from brain connectomics reflects the level of brain maturation along with […]

JCR Articles Publications

Structure–Function Connectomics Reveals Aberrant Developmental Trajectory Occurring at Preadolescence in the Autistic Brain

Published June 12, 2020

Arrate Sevilla , Celia Morales, Pilar A. Ezkurra, Javier Rasero, Verónica Velasco, Goikoane Cancho-Galan, na Sánchez-Diez, armele Mujika, Cristina Penas, Isabel Smith, Aintzane Asumendi, Jesús M. Cortés, Maria Dolores Boyano, and Santos Alonso. BRAF V600E mutational load as a prognosis biomarker in malignant melanoma. Plos One 15:e0230136, 2020 [pdf] Abtstract Analyzing the mutational load of driver mutations in melanoma could provide valuable information regarding its progression. We aimed at analyzing […]

JCR Articles Publications

BRAF V600E mutational load as a prognosis biomarker in malignant melanoma

Published June 12, 2020

Yossi Mosbacher, Farad Khoyratee, Miri Goldin, Sivan Kanner, Yenehaetra Malakai, Moises Silva, Filippo Grassia, Yoav Ben Simon, Jesus Cortes, Ari Barzilai, Timothée Levi, and Paolo Bonifazi. Toward neuroprosthetic real-time communication from in silico to biological neuronal network via patterned optogenetic stimulation. Scientific Reports 10: 7512, 2020 [pdf] Abstract Restoration of the communication between brain circuitry is a crucial step in the recovery of brain damage induced by traumatic injuries or […]

JCR Articles Publications

Toward neuroprosthetic real-time communication from in silico to biological neuronal network via patterned …

Published June 12, 2020

[spanish]

Jesus Cortes, Data Scientist:

  • More than 20 years experience - In research, working in data science, including modeling, analyses, and image processing, see my ORCID profile at https://orcid.org/0000-0002-9059-8194
  • High interdisciplinary experience - Combining physics, neuroscience, neuroimaging, data science, engineering, and medicine.
  • Getting funding - In competitive calls and working with the industry, achieving funding for more than 6,96 M EUR.
  • Science communication - Giving more than 86 talks at the international level, and publishing 103 articles indexed in Journal Citation Reports, 84 of them in the first quartile.
  • Training of qualified professionals - Supervising more than 30 students, including Bachelor, Master, and Thesis.
  • Research projects evaluation - Regularly for different funding agencies such as Spanish National Science Plan in the panel of Biomedical Engineering, the Spanish Health Plan in the panel of Neurology, and also at international programs, such as the Marie Sklodowska-Curie Actions, the Research Foundation Flanders (FWO), the EPSRC in the UK, and the BBSRC in the UK.

Contact - If you are interested in knowing details or possibilities of collaboration:
Jesus Cortes, Ph.D.:
jesus.m.cortes@gmail.com
Computational Neuroimaging Lab
BioCruces-Bizkaia Health Research Institute
Hospital Universitario Cruces
Plaza de Cruces, s/n E-48903. Barakaldo, Spain
Tel +34 94 600 6000 (ext. 5199)


 

Jesus Cortes, Científico de Datos:

  • Más de 20 años de experiencia - En investigación, trabajando con datos, en modelado, análisis e imágenes. Consulte mi perfil profesional ORCID en https://orcid.org/0000-0002-9059-8194
  • Altamente interdisciplinar - Combinando física, neurociencias, neuroimagen, ciencia de datos, ingeniería y medicina.
  • Consiguiendo financiación - En convocatorias competitivas y trabajando con la industria, habiendo conseguido más de 6,96 Millones Euros.
  • Difusión internacional - Impartiendo más de 86 charlas a nivel internacional y publicando más 103 artículos indexados en el Journal Citation Reports, 84 de ellos en primer cuartil.
  • Formación de personal cualificado - Supervisando a más de 30 estudiantes, incluyendo Licenciatura, Maestría y Tesis.
  • Evaluación de proyectos - Lo hago de forma habitual en el Plan Nacional de Investigación Español en el panel de Ingeniería Biomédica, el Plan Nacional Carlos iii en Salud en el panel de Neurología, y en programas internacionales, incluidas las acciones Marie Sklodowska-Curie, la Research Foundation Flanders (FWO), EPSRC en Reino Unido y BBSRC en Reino Unido.
  • Contacta - Si estás interesado en conocer detalles o posibilidades de colaboración:

Jesus Cortes, Ph.D.:
jesus.m.cortes@gmail.com
Computational Neuroimaging Lab
BioCruces-Bizkaia Health Research Institute
Hospital Universitario Cruces
Plaza de Cruces, s/n E-48903. Barakaldo, Spain
Tel +34 94 600 6000 (ext. 5199)

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