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Jesus Cortes

Brain Connectivity & Machine Learning
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Jesus Cortes

Brain Connectivity & Machine Learning
  • Search
  • Home
  • Biosketch
  • Latest News
  • Talks
  • Publications
    • JCR Articles
    • non JCRs
    • Abstracts
  • Docencia

2021, Que es la conectividad cerebral y como utilizarla en Investigacion clinica. Programa especial del 50 aniversario de la Universidad del Norte. Psicologia de la Salud: desafios contemporaneos y nuevas perspectivas. Univesidad del Norte, Barranquilla, Colombia

Talks

Que es la conectividad cerebral y como utilizarla en Investigacion clinica

Published June 8, 2021

2021, Redes del cerebro, edad del conectoma, y como utilizarla para el estudio de patologias. Universidad del Valparaiso, Chile

Talks

Redes del cerebro, edad del conectoma, y como utilizarla para el …

Published June 8, 2021

Antonio Jimenez-Marin, Ibai Diez, Maria C. Caballero, Isidro Ferrer, Garazi Labayru, Pol Andres-Benito, Andone Sistiaga, Jorge Sepulcre, Adolfo Lopez de Munain, and Jesus M. Cortes. Transcriptional signatures of synaptic vesicle genes define myotonic dystrophy type I neurodegeneration. Neuropathology and Applied Neurobiology . In press, 2021. biorxiv: [pdf] article: [pdf] Abstract Aim: To delineate the neurogenetic profiles of brain degeneration patterns in myotonic dystrophy type I (DM1). Methods: In two cohorts […]

JCR Articles Publications

Transcriptional signatures of synaptic vesicle genes define myotonic dystrophy type I neurodegeneration

Published June 8, 2021

Changchun He, Heng Chen, Xiaonan Guo, Ruishi Wang, Lingyin Kong, Xinyue Huang, Huafu Chen, Jinming Xiao, Xiaolong Shan, Rui Feng, Xujun Duan. Individual-based morphological brain network organization and its association with autistic symptoms in young children with autism spectrum disorder. Human Brain Mapping. In press, 2021 [pdf] Abstract Individual-based morphological brain networks built from T1-weighted magnetic resonance imaging (MRI) reflect synchronous maturation intensities between anatomical regions at the individual level. […]

JCR Articles Publications

Individual-based morphological brain network organization and its association with autistic symptoms in young …

Published June 8, 2021

Leire Torices, Javier de las Heras, Juan Carlos Arango-Lasprilla, Jesús M. Cortes, Caroline E. Nunes-Xavier , Rafael Pulido. MMADHC premature termination codons in the pathogenesis of cobalamin D disorder: Potential of translational readthrough reconstitution. Molecular Genetics and Metabolism Reports. In press, 2021 [pdf] Abstract Mutations in the MMADHC gene cause cobalamin D disorder (cblD), an autosomal recessive inborn disease with defects in intracellular cobalamin (cbl, vitamin B12) metabolism. CblD patients […]

JCR Articles Publications

MMADHC premature termination codons in the pathogenesis of cobalamin D disorder: Potential of …

Published June 8, 2021

Sandra Luna, Leire Torices, Janire Mingo, Laura Amo, Isabel Rodríguez‐Escudero, Pablo Ruiz‐Ibarlucea, Asier Erramuzpe, Jesús M. Cortés, María I. Tejada, María Molina, Caroline E. Nunes‐Xavier, José I. López, Víctor J. Cid, and Rafael Pulido. A global analysis of the reconstitution of PTEN function by translational readthrough of PTEN pathogenic premature termination codons. Human Mutation. In press, 2021 [pdf] Abstract The PTEN tumor suppressor gene is mutated with high incidence in […]

JCR Articles Publications

A global analysis of the reconstitution of PTEN function by translational readthrough of …

Published June 8, 2021

Marilyn Gatica, Rodrigo Cofré, Pedro A.M. Mediano, Fernando E. Rosas, Patricio Orio, Ibai Diez, Stephan P. Swinnen, and Jesus M. Cortes. High-order interdependencies in the aging brain. Brain connectivity . In press, 2021. biorxiv: [pdf] article: [pdf] Abstract Background: Brain interdependencies can be studied from either a structural/anatomical perspective (“structural connectivity”-SC) or by considering statistical interdependencies (“functional connectivity”-FC). Interestingly, while SC is by definition pairwise (white-matter fibers project from one […]

JCR Articles Publications

High-order interdependencies in the aging brain

Published June 8, 2021

JJ Torres, MA Muñoz, Jesus M Cortes, J Mejias. Special Issue on Emergent Effects in Stochastic Neural Networks with Application to Learning and Information Processing. Neurocomputing . In press, 2021. [pdf] Abstract This special issue includes a series of 12 articles, which represent a selection of extended contributions presented at the 15th Granada Seminar on Computational and Statistical Physics held in Granada from September 17 to 20, 2019, and organized […]

JCR Articles Publications

Emergent Effects in Stochastic Neural Networks

Published June 8, 2021

A Safari, P Moretti, I Diez, JM Cortes, MA Muñoz. Persistence of hierarchical network organization and emergent topologies in models of functional connectivity. Neurocomputing . In press, 2021. arxiv: [pdf] article: [pdf] Abstract Functional networks provide a topological description of activity patterns in the brain, as they stem from the propagation of neural activity on the anatomical or structural network of synaptic connections. This last is well known to be […]

JCR Articles Publications

Persistence of hierarchical network organization and emergent topologies in models of functional connectivity

Published February 8, 2021

I Fernandez-Iriondo, A Jimenez-Marin, I Diez, P Bonifazi, SP Swinnen, MA Munoz, JM Cortes. Low variability of dynamical functional connectivity in cerebellar networks. Neurocomputing . In press, 2021 biorxiv: [pdf] article: [pdf] Abstract Brain networks can be defined and explored using different types of connectivity. Here, we studied P=48 healthy participants with neuroimaging state-of-the-art techniques and analyzed the relationship between the actual structural connectivity (SC) networks (between 2514 regions of […]

JCR Articles Publications

Low variability of dynamical functional connectivity in cerebellar networks

Published January 5, 2021

Ane Murueta‐Goyena, Rocío Del Pino, Marta Galdós, Begoña Arana, Marian Acera, Mar Carmona‐Abellán, Tamara Fernández‐Valle, Beatriz Tijero, Olaia Lucas‐Jiménez, Natalia Ojeda, Naroa Ibarretxe‐Bilbao, Javier Peña, Jesus Cortes, Unai Ayala, Maitane Barrenechea, Juan Carlos Gómez‐Esteban, and Iñigo Gabilondo. Retinal Thickness Predicts the Risk of Cognitive Decline in Parkinson Disease. Annals of neurology 89: 165-176, 2021 [pdf] Abstract Objective: This study was undertaken to analyze longitudinal changes of retinal thickness and their […]

JCR Articles Publications

Retinal Thickness Predicts the Risk of Cognitive Decline in Parkinson Disease

Published January 5, 2021

Garazi Labayru, Antonio Jimenez-Marin, Esther Fernandez, Jorge Villanua, Miren Zulaica, Jesus M. Cortes, Ibai Diıez, Jorge Sepulcre, Adolfo Lopez de Munain, Andone Sistiaga. Neurodegeneration trajectory in pediatric and adult/lateDM1: A follow-up MRI study across a decade. Annals of Clinical and Translational Neurology 7:1802-1815, 2020 [pdf] Abstract Objective: To characterize the progression of brain structural abnormalities in adults with pediatric and adult/late onset DM1, as well as to examine the potential […]

JCR Articles Publications

Neurodegeneration trajectory in pediatric and adult/lateDM1: A follow-up MRI study across a decade

Published October 2, 2020

2020, Avances en conectividad de cerebral en enfermedades neurodegenerativas y en daño cerebral adquirido. XLVII SEMANA MÉDICA-NEUROLÓGICA. 28-30 sept, Bilbao, Spain

Talks

Avances en conectividad de cerebral en enfermedades neurodegenerativas y en daño cerebral …

Published October 2, 2020

Informativo ITEMAS habla de nuestro proyecto financiado por primera vez a una institución española por la iniciativa Brain. This project, headed by Prof. Hasan in Achucarro, and where also participates Prof. Ramos in CIC-Biomagune and muyself, aims to achieve whole-brain imaging at cellular resolution You can watch the video at (in Spanish).

Latest News

Informativo ITEMAS habla de nuestro proyecto

Published July 11, 2020

Javier De Las Heras, Ibai Diez, Antonio Jimenez-Marin, Alberto Cabrera, Daniela Ramos-Usuga, Marta Venecia Diaz-Fernandez, Leire Torices,Caroline E. Nunes-Xavier, Rafael Pulido, Juan Carlos Arango-Lasprilla, and Jesus M. Cortes. Brain Circuit Alterations and Cognitive Disability in Late-Onset Cobalamin D Disorder. J Clinical Medicine 9: 990, 2020 [pdf] Abstract Neuroimaging studies describing brain circuits’ alterations in cobalamin (vitamin B12)-deficient patients are limited and have not been carried out in patients with inborn […]

JCR Articles Publications

Brain Circuit Alterations and Cognitive Disability in Late-Onset Cobalamin D Disorder

Published June 12, 2020

Changchun He, Huafu Chen, Lucina Q Uddin, Asier Erramuzpe, Paolo Bonifazi, Xiaonan Guo, Jinming Xiao, Heng Chen, Xinyue Huang, Lei Li, Wei Sheng, Wei Liao, Jesus M Cortes, and Xujun Duan. Structure-Function Connectomics Reveals Aberrant Developmental Trajectory Occurring at Preadolescence in the Autistic Brain. Cerebral Cortex 30: 5028–5037, 2020 [pdf] Abstract Accumulating neuroimaging evidence shows that age estimation obtained from brain connectomics reflects the level of brain maturation along with […]

JCR Articles Publications

Structure–Function Connectomics Reveals Aberrant Developmental Trajectory Occurring at Preadolescence in the Autistic Brain

Published June 12, 2020

Arrate Sevilla , Celia Morales, Pilar A. Ezkurra, Javier Rasero, Verónica Velasco, Goikoane Cancho-Galan, na Sánchez-Diez, armele Mujika, Cristina Penas, Isabel Smith, Aintzane Asumendi, Jesús M. Cortés, Maria Dolores Boyano, and Santos Alonso. BRAF V600E mutational load as a prognosis biomarker in malignant melanoma. Plos One 15:e0230136, 2020 [pdf] Abtstract Analyzing the mutational load of driver mutations in melanoma could provide valuable information regarding its progression. We aimed at analyzing […]

JCR Articles Publications

BRAF V600E mutational load as a prognosis biomarker in malignant melanoma

Published June 12, 2020

Yossi Mosbacher, Farad Khoyratee, Miri Goldin, Sivan Kanner, Yenehaetra Malakai, Moises Silva, Filippo Grassia, Yoav Ben Simon, Jesus Cortes, Ari Barzilai, Timothée Levi, and Paolo Bonifazi. Toward neuroprosthetic real-time communication from in silico to biological neuronal network via patterned optogenetic stimulation. Scientific Reports 10: 7512, 2020 [pdf] Abstract Restoration of the communication between brain circuitry is a crucial step in the recovery of brain damage induced by traumatic injuries or […]

JCR Articles Publications

Toward neuroprosthetic real-time communication from in silico to biological neuronal network via patterned …

Published June 12, 2020

Filippo Mancuso, Sergio Lage, Javier Rasero, José Luis Díaz‐Ramón, Aintzane Apraiz, Gorka Pérez‐Yarza, Pilar Ariadna Ezkurra, Cristina Penas, Ana Sánchez‐Diez, María Dolores García‐Vazquez, Jesús Gardeazabal, Rosa Izu, Karmele Mujika, Jesús Cortés, Aintzane Asumendi, and María Dolores Boyano. Serum markers improve current prediction of metastasis development in early‐stage melanoma patients: a machine learning‐based study. Molecular Oncology 14:1705-1718, 2020 [pdf] Abstract Metastasis development represents an important threat for melanoma patients, even when […]

JCR Articles Publications

Serum markers improve current prediction of metastasis development in early‐stage melanoma patients: a …

Published June 12, 2020

Headed by Prof. Mazahir Hasan in the Achucarro Center for Neuroscience, and together with Prof. Pedro Ramos in CIC-Biomagune, we were the first team in Spain funded by the prestigious NIH-funded Brain Initiative. We aim to develop full-brain imaging genetic-technology at the cellular resolution. You can find more information at: https://www.ikerbasque.net/en/news/novel-genetic-technology-functional-mapping-entire-brain and in Spanish at: https://cadenaser.com/emisora/2020/05/28/radio_bilbao/1590659425_641261.html

Latest News

NIH Brain Initiative funded our project!

Published June 12, 2020

Antonio Jimenez-Marin, Diego Rivera, Victoria Boado, Ibai Diez, Fermin Labayen, Irati Garrido, Daniela Ramos-Usuga, Itziar Benito-Sanchez, Javier Rasero, Alberto Cabrera Zubizarreta, Inigo Gabilondo, Sebastiano Stramaglia, Juan Carlos Arango-Lasprilla, Jesus M. Cortes. Brain Connectivity And Cognitive Functioning In Individuals Six Months After Multiorgan Failure Neuroimage: Clinical 25: 102137, 2020 [pdf] Abstract Multiorgan failure (MOF) is a life-threating condition that affects two or more systems of organs not involved in the disorder […]

JCR Articles Publications

Brain Connectivity And Cognitive Functioning In Individuals Six Months After Multiorgan Failure

Published December 26, 2019

Caroline E. Nunes-Xavier, Olaia Aurtenetxe, Laura Zaldumbide, Ricardo López-Almaraz, Asier Erramuzpe, Jesús M. Cortés, José I. López and Rafael Pulido. Protein tyrosine phosphatase PTPN1 modulates cell growth and associates with poor outcome in human neuroblastoma Diagnostic Pathology 14:134, 2019 [pdf] Abstract Background: Protein tyrosine phosphatases (PTPs) regulate neuronal differentiation and survival, but their expression patterns and functions in human neuroblastoma (NB) are scarcely known. Here, we have investigated the function […]

JCR Articles Publications

Protein tyrosine phosphatase PTPN1 modulates cell growth and associates with poor outcome in …

Published December 26, 2019

Ildefonso M. De la Fuente, Carlos Bringas, Iker Malaina, Benjamin Regner, Alberto Pérez-Samartín, María Dolores Boyano, María Fedetz, José I. López, Gorka Pérez-Yarza, Jesus M. Cortes and Terrence Sejnowski. The nucleus does not significantly affect the migratory trajectories of amoeba in two-dimensional environments Scientific Reports 9:16369, 2019 [pdf] Abstract For a wide range of cells, from bacteria to mammals, locomotion movements are a crucial systemic behavior for cellular life. Despite […]

JCR Articles Publications

The nucleus does not significantly affect the migratory trajectories of amoeba in two-dimensional …

Published December 26, 2019

Garazi Labayru, Ibai Diez, Jorge Sepulcre, Esther Fernández, Miren Zulaica, Jesús M. Cortés, Adolfo López de Munain, Andone Sistiaga. Regional brain atrophy in gray and white matter is associated with cognitiveimpairment in Myotonic Dystrophy type 1 Neuroimage: Clinical 24: 102078, 2019 [pdf] Abstract Background Myotonic Dystrophy type 1 (DM1) is a slowly progressive myopathy characterized by varying multisystemic involvement. Several cerebral features such as brain atrophy, ventricular enlargement, and white […]

JCR Articles Publications

Regional brain atrophy in gray and white matter is associated with cognitiveimpairment in …

Published December 26, 2019

Peter beim Graben, Antonio Jimenez-Marin, Ibai Diez, Jesus M. Cortes, Mathieu Desroches and Serafim Rodrigues. Metastable Resting State Brain Dynamics. Frontiers in Computational Neuroscience 13:62, 2019 [pdf] Abstract Metastability refers to the fact that the state of a dynamical system spends a large amount of time in a restricted region of its available phase space before a transition takes place, bringing the system into another state from where it might […]

JCR Articles Publications

Metastable Resting State Brain Dynamics

Published December 26, 2019

Together with other NeuroLagun colleagues, we have organised the second session of a divulgation seminar composed by several short-talks about ageing. Four different talks, Most prevalent neurodegenerative diseases in ageing (Iñigo Gabilondo), Treatment and care in the Basque Country (Juan Carlos Gomez), Rehabilitation (Juan Carlos Arango), Attention to the caregiver (Laiene Olabarrieta) The seminar is Tuesday Nov 26th 2019, at 6.00pm in Astra-Gernika

Latest News

II Jornadas Envejecimiento en Gernika

Published December 26, 2019

Together with other NeuroLagun colleagues, we have organised the second session of a divulgation seminar composed by several short-talks about ageing. Four different talks, Most prevalent neurodegenerative diseases in ageing (Iñigo Gabilondo), Treatment and care in the Basque Country (Juan Carlos Gomez), Rehabilitation (Juan Carlos Arango), Attention to the caregiver (Laiene Olabarrieta) The seminar is Thursday Oct 17th 2019, at 6.00pm in Goñi Portal

Latest News

II Jornadas Envejecimiento Plentzia

Published December 26, 2019

2019, Multiscale Brain Hierarchial Networks. COSNET19- Bilbao. October 9-11 Bilbao. Spain

Talks

Multiscale Brain Hierarchial Networks

Published November 18, 2019

2019, Brain networks as a predictor of aging along lifespan. 15th Granada Seminar on Stochastic and Collective Effects in Neural Systems: Biological aspects, Modeling, Dynamics, Networks, Function and Applications. September 17-20, 2019. Granada, Spain

Talks

Brain networks as a predictor of aging along lifespan

Published September 22, 2019

2019, Taller de Neuroimagen y Daño Cerebral. Precongreso del III Congreso Iberoamericano de Neuropsicologia y II Congreso de la Sociedad Colombiana de Neuropsicologia: Avances en la Disciplina. Universidad Pontificia Universidad Javeriana de Cali. 12-14 Septiembre 2019. Cali, Colombia.

Talks

Taller de Neuroimagen y Daño Cerebral

Published September 22, 2019

[spanish]

Jesus Cortes, Data Scientist:

  • More than 20 years experience - In research, working in data science, including modeling, analyses, and image processing, see my ORCID profile at https://orcid.org/0000-0002-9059-8194
  • High interdisciplinary experience - Combining physics, neuroscience, neuroimaging, data science, engineering, and medicine.
  • Getting funding - In competitive calls and working with the industry, achieving funding for more than 8,10 Millions Euros.
  • Science communication - Giving more than 94 talks at the international level, and publishing 111 articles indexed in Journal Citation Reports, 88 of them in the first quartile.
  • Training of qualified professionals - Supervising more than 30 students, including Bachelor, Master, and Thesis.
  • Research projects evaluation - Regularly for different funding agencies such as Spanish National Science and Health Ministry, and also at international programs, such as the Marie Sklodowska-Curie Actions, the Israel Science Foundation, the Research Foundation Flanders (FWO), the EPSRC in the UK, and the BBSRC in the UK.

Contact - If you are interested in knowing details or possibilities of collaboration:
Jesus Cortes, Ph.D.:
jesus.m.cortes@gmail.com
Computational Neuroimaging Lab
BioCruces-Bizkaia Health Research Institute
Hospital Universitario Cruces
Plaza de Cruces, s/n E-48903. Barakaldo, Spain
Tel +34 94 600 6000 (ext. 5199)


 

Jesus Cortes, Científico de Datos:

  • Más de 20 años de experiencia - En investigación, trabajando con datos, en modelado, análisis e imágenes. Consulte mi perfil profesional ORCID en https://orcid.org/0000-0002-9059-8194
  • Altamente interdisciplinar - Combinando física, neurociencias, neuroimagen, ciencia de datos, ingeniería y medicina.
  • Consiguiendo financiación - En convocatorias competitivas y trabajando con la industria, habiendo conseguido más de 8,10 Millones de Euros.
  • Difusión internacional - Impartiendo más de 94 charlas a nivel internacional y publicando más 111 artículos indexados en el Journal Citation Reports, 88 de ellos en primer cuartil.
  • Formación de personal cualificado - Supervisando a más de 30 estudiantes, incluyendo Licenciatura, Maestría y Tesis.
  • Evaluación de proyectos - Lo hago de forma habitual en el Plan Nacional de Ciencia y Salud Español, y en programas internacionales, incluidas las acciones Marie Sklodowska-Curie, la Israel Science Foundation, la Research Foundation Flanders (FWO), EPSRC en Reino Unido y BBSRC en Reino Unido.
  • Contacta - Si estás interesado en conocer detalles o posibilidades de colaboración:

Jesus Cortes, Ph.D.:
jesus.m.cortes@gmail.com
Computational Neuroimaging Lab
BioCruces-Bizkaia Health Research Institute
Hospital Universitario Cruces
Plaza de Cruces, s/n E-48903. Barakaldo, Spain
Tel +34 94 600 6000 (ext. 5199)

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